A table of assay_type,dge_method combination parameters

Source: R/fdge.R

This table is used to match the assay_type,dge_method combination with the appropriate bioc container class bioc_class, and default edgeR/limma model fitting params.

fdge_methods(assay_type = NULL, on_missing = c("error", "warning"))

Arguments

assay_type

An optional string specifying the valid dge methods for a given assay type.

Value

A tibble of assay_type -> method and parameter associtiations. If assay_typeis not NULL, this will be filtered to the associations valid only for that assay_type. If none are found, this will be a 0-row tibble.