Extract gene- and transcript-level information from an ENSEMBL gtf.

Source: R/extract_transcribed_info_from_ensembl_gtf.R

This was written for release_28 annotations. This is noted because some column names seemsed to have changed, ie. "gene_type" instead of "gene_biotype", etc. Let's see how consistent this is!

extract_transcribed_info_from_ensembl_gtf(
  fn,
  gene_type = "gene_type",
  transcript_type = "transcript_type"
)

Arguments

fn

the path to the ENSEMBL (or GENCODE) GTF

Value

a list of tibbles with $transcript_info and $gene_info elements