Appends covariate columns to a query result

Note that this function will force the collection of x

fetch_sample_covariates(
  x,
  samples = NULL,
  covariates = NULL,
  custom_key = Sys.getenv("USER"),
  with_source = FALSE,
  ...
)

with_sample_covariates(
  x,
  covariates = NULL,
  na.rm = FALSE,
  custom_key = Sys.getenv("USER"),
  .fds = NULL,
  ...
)

# S3 method for FacileDataSet
fetch_sample_covariates(
  x,
  samples = NULL,
  covariates = NULL,
  custom_key = Sys.getenv("USER"),
  with_source = FALSE,
  ...
)

# S3 method for facile_frame
fetch_sample_covariates(
  x,
  samples = NULL,
  covariates = NULL,
  custom_key = Sys.getenv("USER"),
  with_source = FALSE,
  ...
)

Arguments

x	a `FacileDataSet` connection
samples	a samples descriptor `tbl_*`
covariates	character vector of covariate names
custom_key	The key to use to fetch more custom annotations over the given samples
na.rm	if `TRUE`, filters outgoing result such that only rows with nonNA values for the `covariates` specified here will be returned. Default: `FALSE`. Note that this will not check columns not specified in `covariates` for NA-ness.
.fds	A `FacileDataSet` object

Value

The facile x object, annotated with the specified covariates.

rows from the sample_covariate table

Arguments

Value

See also